پژوهشنامه اصلاح گیاهان زراعی

1. Aghaei, K., A.A. Ehsanpour, A.H. Shah and S. Komatsu. 2009. Proteome analysis of soybean hypocotyl and root under salt stress. Amino Acids, 36: 91-98. [DOI:10.1007/s00726-008-0036-7]

2. Ahmadi, K., H.R. Abadzadeh, F. Hatami, H. Abdshah and A. Kazemian. 2020. Agricultural statistics of 2018-19: Crop plants (Section 1). Ministry of Agriculture Jihad, Vice President of Plan and Budget, Departement of Statistics and Information, (1): 92 (In Persian).

3. Ahsan, N., T. Donnart, M.Z.Z. Nouri and S. Komatsu. 2010. Tissue-specific defense and thermo-adaptive mechanisms of soybean seedlings under heat stress revealed by proteomic approach. Journal Proteome Research, 9(8): 4189-4204. [DOI:10.1021/pr100504j]

4. Ahsan, N., Y. Nanjo, H. Sawada, Y. Kohno and S. Komatsu. 2010. Ozone stress‐induced proteomic changes in leaf total soluble and chloroplast proteins of soybean reveal that carbon allocation is involved in adaptation in the early developmental stage. Proteomics, 10(14): 2605-2619. [DOI:10.1002/pmic.201000180]

5. Bahrman, N., J. Le Gouis, L. Negroni, L. Amilhat, P. Leroy, A.A.L. Lainé and O. Jaminon. 2004. Differential protein expression assessed by two‐dimensional gel electrophoresis for two wheat varieties grown at four nitrogen levels. Proteomics, 4(3): 709-719. [DOI:10.1002/pmic.200300571]

6. Baker, N.R. and H.C. Thomas. 2013. Crop photosynthesis: spatial and temporal determinants. Elsiver press, pp: 471.

7. Bevan, M., I. Bancroft, E. Bent, K. Love, H. Goodman, C. Dean, R. Bergkamp, W. Dirkse, M. Van Staveren, W. Stiekema, L. Drost, P. Ridley, S.A. Hudson, K. Patel, G. Murphy, P. Piffanelli, H. Wedler, E. Wedler, R. Wambutt, T. Weitzenegger, T.M. Pohl, N. Terryn, J. Gielen, R. Villarroel, R. De Clerck, M. Van Montagu, A. Lecharny, S. Auborg, I. Gy, M. Kreis, N. Lao, T. Kavanagh, S. Hempel, P. Kotter, K.D. Entian, M. Rieger, M. Schaeffer, B. Funk, S. Mueller-Auer, M. Silvey, R. James, A. Montfort, A. Pons, P. Puigdomenech, A. Douka, E. Voukelatou, D. Milioni, P. Hatzopoulos, E. Piravandi, B. Obermaier, H. Hilbert, A. Düsterhöft, T. Moores, J.D. Jones, T. Eneva, K. Palme, V. Benes, S. Rechman, W. Ansorge, R. Cooke, C. Berger, M. Delseny, M. Voet, G. Volckaert, H.W. Mewes, S. Klosterman, C. Schueller and N. Chalwatzis. 1998. Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana. Nature, 391(6666): 485-488. [DOI:10.1038/35140]

8. Bradford, M.M. 1976. Rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye biding. Annuals of Biochemistry, 72: 248. [DOI:10.1016/0003-2697(76)90527-3]

9. Crafts-Brandner, S.J., F.E. Below, J.E. Harper, R.H. Hageman and U. States. 1984. Effects of pod removal on metabolism and senescence of nodulating and nonnodulating soybean isolines II. Enzymes and Chlorophyll. Plant physiology, 75(2): 311-317. [DOI:10.1104/pp.75.2.311]

10. Damerval, C. and M. Zivy. 1986. Technical improvements in two-dimensional electro- phoresis increase the level of genetic variation detected in wheat-seedling proteins. Electrophoresis, 7: 52-54. [DOI:10.1002/elps.1150070108]

11. Ellis, R.J. 2006. Molecular chaperones: assisting assembly in addition to folding. Trends in Biochemical Sciences, 31(7): 395-401. [DOI:10.1016/j.tibs.2006.05.001]

12. FAOSTAT. 2022. Food and Agriculture Organization Crop Production Statistics: World sorghum production and utilization.

13. Fontaine, J.X., T. Tercé-Laforgue, P. Armengaud, G. Clément, J.P. Renou, S. Pelletier, M. Catterou, M. Azzopardi, Y. Gibon and P.J. Lea. 2012. Characterization of a NADH-dependent glutamate dehydrogenase mutant of Arabidopsis demonstrates the key role of this enzyme in root carbon and nitrogen metabolism. The Plant Cell, 24(10): 4044-4065. [DOI:10.1105/tpc.112.103689]

14. Fukayama, H., C. Ueguchi, K. Nishikawa, N. Katoh, C. Ishikawa, C. Masumoto, T. Hatanaka and S. Misoo. 2012. Overexpression of Rubisco activase decreases the photosynthetic CO2 assimilation rate by reducing Rubisco content in rice leaves. Plant Cell Physiolgy, 53(6): 976-986. [DOI:10.1093/pcp/pcs042]

15. Galant, A., R.P. Koester, E.A. Ainsworth, L.M. Hicks and J.M. Jez. 2012. From climate change to molecular response: redox proteomics of ozone-induced responses in soybean. New Phytologist, 194: 220-229. [DOI:10.1111/j.1469-8137.2011.04037.x]

16. Hajduch, M., A. Ganapathy, J.W. Stein and J.J. Thelen. 2005. A systematic proteomic study of seed filling in soybean. Establishment of high-resolution two-dimensional reference maps, expression profiles, and an interactive proteome database. Plant Physiology, 137(4): 1397-1419. [DOI:10.1104/pp.104.056614]

17. Harbach, C., S. Chawla, C.R. Bowen, C.B. Hill, E.D. Nafziger and G.L. Hartman. 2016. Association of green stem disorder with agronomic traits in soybean. Agronomy Journal, 108(6): 2263-2268. [DOI:10.2134/agronj2016.03.0155]

18. Harbach, C.J., T.W. Allen, C.R. Bowen, J.A. Davis, C.B. Hill, M. Leitman, B.R. Leonard, D.S. Mueller, G.B. Padgett, X.A. Phillips, R.W. Schneider, E.J. Sikora, A.K. Singh and G.L. Hartman. 2016. Delayed senescence in soybean: Terminology, research update, and survey results from growers. Plant Health Progress, 17(2): 76-83. [DOI:10.1094/PHP-RV-16-0008]

19. Hill, C.B., G.L. Hartman, R. Esgar and H.A. Hobbs. 2006. Field evaluation of green stem disorder in soybean cultivars. Crop Science, 46(2): 879-885. [DOI:10.2135/cropsci2005.0207]

20. Hill, C.B.B., C.R.R. Bowen, G.L.L. Hartman, C. Sciences, C.R.R. Bowen and U. States. 2013. Effect of fungicide application and cultivar on soybean green stem disorder. Plant Disease, 97(9): 1212-1220. [DOI:10.1094/PDIS-12-12-1191-RE]

21. Isobe, K., K. Ozaki, K. Saito, D. Hatoya, M. Higo, K. Isobe, K. Ozaki, K. Saito, D. Hatoya, M. Higo and Y. Torigoe. 2015. Varietal difference in the occurrence of delayed stem senescence and cytokinin level in the xylem exudate in soybeans. Plant Production Science, 18 (3): 356-364. [DOI:10.1626/pps.18.356]

22. Kottapalli, K.R., R. Rakwal, J. Shibato, G. Burow, D. Tissue, J. Burke, N. Puppala, M. Burow and P. Payton. 2009. Physiology and proteomics of the water‐deficit stress response in three contrasting peanut genotypes. Plant, Cell and Environment, 32(4): 380-407. [DOI:10.1111/j.1365-3040.2009.01933.x]

23. Leonard, B.R., D.J. Boquet, B. Padgett, S.R. DavisJA, J.L. Griffin, R.A. Valverde, R.J. Levy Jr, J.A. Davis, R. Schneider, J.L. Griffin, R.A. Valverde and J.J. Ronald Levy. 2011. Soybean green plant malady: Contributing factors and mitigation. Louisiana Agriculture, 54(2): 32-34.

24. Liu, J., Y.H. Wu, J.J. Yang, Y.D. Liu and F.F. Shen. 2008. Protein degradation and nitrogen remobilization during leaf senescence. Journal of Plant Biology, 51(1): 11-19. [DOI:10.1007/BF03030735]

25. Masclaux, C., M.H.H. Valadier, N. Brugière, J.F.F. Morot-Gaudry, B. Hirel, Â. Masclaux, Á. Valadier, N. Brugie, Ë. Morot-gaudry, B. Hirel, C. Masclaux, M.H.H. Valadier, N. Brugière, J.F.F. Morot-Gaudry and B. Hirel. 2000. Characterization of the sink/source transition in tobacco (Nicotiana tabacum L.) shoots in relation to nitrogen management and leaf senescence. Planta, 211(4): 510-518. [DOI:10.1007/s004250000310]

26. Mason, H.S., F.D. Guerrero, J.S. Boyer and J.E. Mullet. 1988. Proteins homologous to leaf glycoproteins are abundant in stems of darkgrown soybean seedlings. Analysis of proteins and cDNAs. Plant Molecular Bology, 11: 845-856. [DOI:10.1007/BF00019524]

27. Masoudi, B. 2021. Screening of soybean genotypes at seedling stage under salinity stress. Journal of Crop Breeding, 13(38): 124-137 (In Persian).

28. Merewitz, E.B., T. Gianfagna and B. Huang. 2011. Protein accumulation in leaves and roots associated with improved drought tolerance in creeping bentgrass expressing an ipt gene for cytokinin synthesis. Journal of Experimental Botany, 62(15): 5311-5333. [DOI:10.1093/jxb/err166]

29. Nunes-nesi, A., F. Carrari, A. Lytovchenko, A.M.O. Smith, M.E. Loureiro, R.G. Ratcliffe, L.J. Sweetlove, A.R. Fernie, M. Pflanzenphysiologie and A.N. Germany. 2005. Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants. Plant Physiology, 137(2): 611-622. [DOI:10.1104/pp.104.055566]

30. Obsil, T. and V. Obsilova. 2011. Structural basis of 14-3-3 protein functions. Seminars in Cell Developemental Biology, 22(7): 663-672. [DOI:10.1016/j.semcdb.2011.09.001]

31. Parry, M.A.J., A.J. Keys, P.J. Madgwick, A.E. Carmo-Silva and P.J. Andralojc. 2008. Rubisco regulation: a role for inhibitors. Journal of Experimental Botany, 59(7): 1569-1580. [DOI:10.1093/jxb/ern084]

32. Payghamzadeh, K. 2016. Investigation of soybean pod distortion syndrome by proteomics and bioinformatics approaches. PhD thesis, Tabriz University, Tabriz, Iran, 146 pp (In Persian).

33. Phillips, X.A., A.K. Singh, Y.R. Kandel and D.S. Mueller. 2017. Effect of pod removal, foliar fungicides, and cultivar on green stem disorder of soybean. Agronomy Journal, 109(6): 2680-2688. [DOI:10.2134/agronj2017.04.0203]

34. Purwestri, Y.A., Y. Ogaki, S. Tamaki, H. Tsuji and K. Shimamoto. 2009. The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a. Plant Cell Physiolgy, 50(3): 429-438. [DOI:10.1093/pcp/pcp012]

35. Radwan, O., X. Wu, M. Govindarajulu, M. Libault, D.J. Neece, M.-H. Oh, R.H. Berg, G. Stacey, C.G. Taylor and S.C. Huber. 2012. 14-3-3 proteins SGF14c and SGF14l play critical roles during soybean nodulation. Plant Physiology, 160(4): 2125-2136. [DOI:10.1104/pp.112.207027]

36. Rahi, A.R., H.N. Zarini, G. Ranjbar and M. Ghajar Spanlo. 2019. Evaluation of tolerance of some soybean senotypes to srought stress. Journal of Crop Breeding, 11 (32): 11-115 (In Persian). [DOI:10.29252/jcb.11.32.100]

37. Rospert, S., Y. Dubaquie, M. Gautschi, Y. Dubaquié and M. Gautschi. 2002. Nascent-polypeptide-associated complex. Cellular and Mollecular Life Science, 59 (10): 1632-1639. [DOI:10.1007/PL00012490]

38. SAS Institute. 1997. SAS/STAT. Usersguid. [Version 6.12]. Cary, NC, SAS Inst.

39. Schneider, R., G. Padgett, D. Boquet and R. Valverde. 2010. Factors affecting the development of the green stem malady in soybean. In: Phytopathology Proceeding. p. S115.

40. Sengupta, S. and A.L. Majumder. 2009. Insight into the salt tolerance factors of a wild halophytic rice, Porteresia coarctata: a physiological and proteomic approach. Planta, 229(4): 911-929. [DOI:10.1007/s00425-008-0878-y]

41. Sözen, E. 2004. Vegetative storage proteins in plants. Anadolu University Journal of Science and Technology, 5 (1): 1-7.

42. Sun, X., X. Luo, M. Sun, C. Chen, X. Ding, X. Wang, S. Yang, Q. Yu, B. Jia, W. Ji, H. Cai and Y. Zhu. 2014. A Glycine soja 14-3-3 protein GsGF14o participates in stomatal and root hair development and drought tolerance in Arabidopsis thaliana. Plant Cell Physiolgy, 55(1): 99-118. [DOI:10.1093/pcp/pct161]

43. Thomas, H. 2013. Senescence, ageing and death of the whole plant. New Phytologist, 197(3): 696-711. [DOI:10.1111/nph.12047]

44. Toorchi, M., K. Yukawa, M.Z.Z. Nouri and S. Komatsu. 2009. Proteomics approach for identifying osmotic-stress-related proteins in soybean roots. Peptides, 30(12): 2108-2117. [DOI:10.1016/j.peptides.2009.09.006]

45. Tseng, T.S., C. Whippo, R.P. Hangarter and W.R. Briggs. 2012. The role of a 14-3-3 protein in stomatal opening mediated by PHOT2 in Arabidopsis. The Plant Cell., 24(3): 1114-1126. [DOI:10.1105/tpc.111.092130]

46. Wilson, K.A., M.T. McManus, M.E.M.E. Gordon and T.W.W. Jordan. 2002. The proteomics of senescence in leaves of white clover, Trifolium repens (L.). Proteomics, 2(9): 1114-1122. https://doi.org/10.1002/1615-9861(200209)2:9<1114::AID-PROT1114>3.0.CO;2-O [DOI:10.1002/1615-9861(200209)2:93.0.CO;2-O]

47. Wittenback, W.A. 1983. Effect of pod removal on leaf photosynthesis and soluble protein composition of field-grown soybeans. Plant Physiology, 73(1): 121-124. [DOI:10.1104/pp.73.1.121]

48. Xiao, X., F. Yang, S. Zhang, H. Korpelainen and C. Li. 2009. Physiological and proteomic responses of two contrasting Populus cathayana populations to drought stress. Physiologia Plantarum, 136(2): 150-168. [DOI:10.1111/j.1399-3054.2009.01222.x]

49. Xu, C., J.H. Sullivan, W.M. Garrett, T.J. Caperna, S. Natarajan and J.H. Sullivan. 2008. Impact of solar Ultraviolet-B on the proteome in soybean lines differing in flavonoid contents. Phytochemistry, 69: 38-48. [DOI:10.1016/j.phytochem.2007.06.010]

50. Yamada, T., S. Shimada, M. Hajika, K. Hirata, K. Takahashi, T. Nagaya, H. Hamaguchi, T. Maekawa, T. Sayama, T. Hayashi, M. Ishimoto and J. Tanaka. 2014. Major QTLs associated with green stem disorder insensitivity of soybean (Glycine max (L.) Merr.). Breeding Science, 64(4): 331-338. [DOI:10.1270/jsbbs.64.331]

51. Yoon, G.M. and J.J. Kieber. 2013. 14-3-3 regulates 1-aminocyclopropane-1-carboxylate synthase protein turnover in Arabidopsis. The Plant Cell, 25(3): 1016-1028. [DOI:10.1105/tpc.113.110106]

52. Zanzarin, D.M., C.P. Hernandes, L.M. Leme, E. Silva, C. Porto, R. Martin do Prado, M.C. Meyer, L. Favoreto, E. de O. Nunes and E.J. Pilau. 2020. Metabolomics of soybean green stem and foliar retention (GSFR) disease using mass spectrometry and molecular networking. Rapid Communications in Mass Spectrometry, 34(S3): 1-8. [DOI:10.1002/rcm.8655]