1. Agarwal, G., V. Garg, H. Kudapa, D. Doddamani, L.T. Pazhamala, A.W. Khan, M. Thudi, S.H. Lee and R.K. Varshney. 2016. Genome‐wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea. Plant biotechnology journal, 14(7): 1563-1577. [
DOI:10.1111/pbi.12520]
2. Bailey, T.L., M. Boden, F.A. Buske, M. Frith, C.E. Grant, L. Clementi, J. Ren, W.W. Li and W.S. Noble. 2009. MEME SUITE: tools for motif discovery and searching. Nucleic acids research, 37: 202-208. [
DOI:10.1093/nar/gkp335]
3. Dutta, R. and M. Inouye. 2000. GHKL, an emergent ATPase/kinase superfamily. Trends in biochemical sciences, 25(1): 24-28. [
DOI:10.1016/S0968-0004(99)01503-0]
4. Faraji, S., H. Najafi-Zarrini, S. Hashemi-Petroudi and G. Ranjbar. 2017. AlGLYI gene implicated in salt stress response from halophyte Aeluropus littoralis. Russian Journal of Plant Physiology, 64(6): 850-860. [
DOI:10.1134/S1021443717060036]
5. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39(4): 783-791. [
DOI:10.1111/j.1558-5646.1985.tb00420.x]
6. Finn, R.D., P. Coggill, R.Y. Eberhardt, S.R. Eddy, J. Mistry, A.L. Mitchell, S.C. Potter, M. Punta, M. Qureshi and A. Sangrador-Vegas. 2015. The Pfam protein families database: towards a more sustainable future. Nucleic Acids Research, 44: 279-285. [
DOI:10.1093/nar/gkv1344]
7. Gasteiger, E., C. Hoogland, A. Gattiker, M.R. Wilkins, R.D. Appel and A. Bairoch. 2005. Protein identification and analysis tools on the ExPASy server. In: Walker, J.M. (eds.) The proteomics protocols handbook. 571-607 pp., Humana Press, New York City, New York, United States. [
DOI:10.1385/1-59259-890-0:571]
8. Ghorbani, H., H. Samizadeh Lahiji and G.A. Nematzadeh. 2019. In Silico Characterization of Proteins Containing ARID-PHD Domain and Its Expression in Aeluropus littoralis Halophyte. Journal of Crop Breeding, 11(29): 143-152. [
DOI:10.29252/jcb.11.29.143]
9. Ghorbani, H.R., H. Samizadeh Lahiji and G.A. Nematzadeh. 2017. Expression pattern analysis of transcription factors from Aeluropus littoralis in response to salt stress and recovery condition. Journal of Plant Molecular Breeding, 5(1): 19-30.
10. Grigorova, B., I. Vaseva, K. Demirevska and U. Feller. 2011. Combined drought and heat stress in wheat: changes in some heat shock proteins. Biologia Plantarum, 55(1): 105-111. [
DOI:10.1007/s10535-011-0014-x]
11. Hainzl, O., M.C. Lapina, J. Buchner and K. Richter. 2009. The charged linker region is an important regulator of Hsp90 function. Journal of Biological Chemistry, 284: 22559-22567. [
DOI:10.1074/jbc.M109.031658]
12. Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41: 95-98.
13. Hao, P., J. Zhu, A. Gu, D. Lv, P. Ge, G. Chen, X. Li and Y. Yan. 2015. An integrative proteome analysis of different seedling organs in tolerant and sensitive wheat cultivars under drought stress and recovery. Proteomics, 15(9): 1544-1563. [
DOI:10.1002/pmic.201400179]
14. Hashemi-Petroudi, S.H., H. Ghorbani and M. Kuhlmann. 2018. Isolation Phosphoglycerate Dehydrogenase gene from Aeluropus littoralis halophyte plant and functional analysis of T-DNA mutant in Arabidopsis thaliana. Crop bitechnology, 8(23): 79-92.
15. Hashemi-Petroudi, S.H., G.A. Nematzadeh, H. Askari and S. Ghahary. 2014. Involvement of Cytosine DNA methylation in different developmental stages of Aeluropus littoralis. Journal of Plant Molecular Breeding, 2(2): 56-67.
16. Hashemi-Petroudi, S.H., G.A. Nematzadeh, H. Askari and Y. Ghasemi. 2012. Pattern of DNA cytosine methylation in Aeluropus littoralis during temperature stress. Journal of Plant Molecular Breeding, 1(1): 16-24.
17. Hashemi-Petroudi, S.H., G.A. Nematzadeh and M. Kuhlmann. 2019. Identification and analysis of a DEVIL paralog gene cluster in Aeluropus littoralis by comparative genomic approach Crop bitechnology, 9(25): 79-92.
18. Hashemipetroudi, S., G. Nematzadeh, G. Ahmadian, A. Yamchi and M. Kuhlmann. 2016. Expression analysis of salt stress related expressed sequence tags (ESTs) from Aeluropus littoralis by quantitative real-time PCR. Bioscience Biotechnology Research Communications, 9(3): 445-456. [
DOI:10.21786/bbrc/9.3/16]
19. Horton, P., K.J. Park, T. Obayashi, N. Fujita, H. Harada, C. Adams-Collier and K. Nakai. 2007. WoLF PSORT: protein localization predictor. Nucleic acids research, 35: 585-587. [
DOI:10.1093/nar/gkm259]
20. Jackson, S.E., C. Queitsch and D. Toft. 2004. Hsp90: from structure to phenotype. Nature Structural & Molecular Biology, 11: 1152-1155. [
DOI:10.1038/nsmb1204-1152]
21. Jones, P., D. Binns, H.Y. Chang, M. Fraser, W. Li, C. McAnulla, H. McWilliam, J. Maslen, A. Mitchell and G. Nuka. 2014. InterProScan 5: genome-scale protein function classification. Bioinformatics, 30(9): 1236-1240. [
DOI:10.1093/bioinformatics/btu031]
22. Kaleybar Shahin, B., G. Nematzadeh, S.H.R. Hashemi, H. Askari and S. Kabirnataj. 2013. Physiological and Genetic Responses of Halophyte Aeluropus Littoralis to Salinity. Journal of Crop Breeding, 5(12): 15-29.
23. Klein, E.M., L. Mascheroni, A. Pompa, L. Ragni, T. Weimar, K.S. Lilley, P. Dupree and A. Vitale. 2006. Plant endoplasmin supports the protein secretory pathway and has a role in proliferating tissues. The Plant Journal, 48(5): 657-673. [
DOI:10.1111/j.1365-313X.2006.02904.x]
24. Krishna, P. and G. Gloor. 2001. The Hsp90 family of proteins in Arabidopsis thaliana. Cell stress & chaperones, 6(3): 238-246.
https://doi.org/10.1379/1466-1268(2001)006<0238:THFOPI>2.0.CO;2 [
DOI:10.1379/1466-1268(2001)0062.0.CO;2]
25. Krystkowiak, I., J. Manguy and N.E. Davey. 2018. PSSMSearch: a server for modeling, visualization, proteome-wide discovery and annotation of protein motif specificity determinants. Nucleic acids research, 46: 235-241. [
DOI:10.1093/nar/gky426]
26. Lv, D.W., S. Subburaj, M. Cao, X. Yan, X. Li, R. Appels, D.F. Sun, W. Ma and Y.M. Yan. 2014. Proteome and phosphoproteome characterization reveals new response and defense mechanisms of Brachypodium distachyon leaves under salt stress. Molecular & Cellular Proteomics, 13(2): 632-652. [
DOI:10.1074/mcp.M113.030171]
27. Marcu, M.G., M. Doyle, A. Bertolotti, D. Ron, L. Hendershot and L. Neckers. 2002. Heat shock protein 90 modulates the unfolded protein response by stabilizing IRE1α. Molecular and cellular biology, 22(24): 8506-8513. [
DOI:10.1128/MCB.22.24.8506-8513.2002]
28. Metsalu, T. and J. Vilo. 2015. ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap. Nucleic acids research, 43: 566-570. [
DOI:10.1093/nar/gkv468]
29. Moore, R.C. and M.D. Purugganan. 2003. The early stages of duplicate gene evolution. Proceedings of the National Academy of Sciences, 100(26): 15682-15687. [
DOI:10.1073/pnas.2535513100]
30. Pearl, L.H. and C. Prodromou. 2000. Structure and in vivo function of Hsp90. Current opinion in structural biology, 10(1): 46-51. [
DOI:10.1016/S0959-440X(99)00047-0]
31. Picard, D. 2002. Heat-shock protein 90, a chaperone for folding and regulation. Cellular and Molecular Life Sciences CMLS, 59(10): 1640-1648. [
DOI:10.1007/PL00012491]
32. Riggs, D.L., M.B. Cox, J. Cheung-Flynn, V. Prapapanich, P.E. Carrigan and D.F. Smith. 2004. Functional specificity of co-chaperone interactions with Hsp90 client proteins. Critical reviews in biochemistry and molecular biology, 39(5-6): 279-295. [
DOI:10.1080/10409230490892513]
33. Sangster, T.A., A. Bahrami, A. Wilczek, E. Watanabe, K. Schellenberg, C. McLellan, A. Kelley, S.W. Kong, C. Queitsch and S. Lindquist. 2007. Phenotypic diversity and altered environmental plasticity in Arabidopsis thaliana with reduced Hsp90 levels. PloS one, 2(7): e648. [
DOI:10.1371/journal.pone.0000648]
34. Sangster, T.A. and C. Queitsch. 2005. The HSP90 chaperone complex, an emerging force in plant development and phenotypic plasticity. Current opinion in plant biology, 8(1): 86-92. [
DOI:10.1016/j.pbi.2004.11.012]
35. Shinozaki, F., M. Minami, T. Chiba, M. Suzuki, K. Yoshimatsu, Y. Ichikawa, K. Terasawa, Y. Emori, K. Matsumoto and T. Kurosaki. 2006. Depletion of Hsp90β induces multiple defects in B cell receptor signaling. Journal of Biological Chemistry, 281(24): 16361-16369. [
DOI:10.1074/jbc.M600891200]
36. Song, H., R. Zhao, P. Fan, X. Wang, X. Chen and Y. Li. 2009. Overexpression of AtHsp90. 2, AtHsp90. 5 and AtHsp90. 7 in Arabidopsis thaliana enhances plant sensitivity to salt and drought stresses. Planta, 229(4): 955-964. [
DOI:10.1007/s00425-008-0886-y]
37. Tamura, K., G. Stecher, D. Peterson, A. Filipski and S. Kumar. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular biology and evolution, 30(12): 2725-2729. [
DOI:10.1093/molbev/mst197]
38. Thompson, J.D., T.J. Gibson and D.G. Higgins. 2003. Multiple sequence alignment using ClustalW and ClustalX. Current protocols in bioinformatics, 1: 2-3. [
DOI:10.1002/0471250953.bi0203s00]
39. Wang, W., B. Vinocur, O. Shoseyov and A. Altman. 2004. Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends in plant science, 9(5): 244-252. [
DOI:10.1016/j.tplants.2004.03.006]
40. Xu, Z.S., Z.Y. Li, Y. Chen, M. Chen, L.C. Li and Y.Z. Ma. 2012. Heat shock protein 90 in plants: molecular mechanisms and roles in stress responses. International journal of molecular sciences, 13(12): 15706-15723. [
DOI:10.3390/ijms131215706]
41. Zhang, J., J. Li, B. Liu, L. Zhang, J. Chen and M. Lu. 2013. Genome-wide analysis of the Populus Hsp90 gene family reveals differential expression patterns, localization, and heat stress responses. BMC genomics, 14(1): 532. [
DOI:10.1186/1471-2164-14-532]
42. Zhang, L., Y. Fan, F. Shi, S. Qin and B. Liu. 2012. Molecular cloning, characterization, and expression analysis of a cytosolic HSP90 gene from Haematococcus pluvialis. Journal of applied phycology, 24(6): 1601-1612. [
DOI:10.1007/s10811-012-9821-5]
43. Zhang, M., C.Y. Ma, D.W. Lv, S.M. Zhen, X.H. Li and Y.M. Yan. 2014. Comparative phosphoproteome analysis of the developing grains in bread wheat (Triticum aestivum L.) under well-watered and water-deficit conditions. Journal of proteome research, 13(10): 4281-4297. [
DOI:10.1021/pr500400t]
44. Zhang, M., Z. Shen, G. Meng, Y. Lu and Y. Wang. 2017. Genome-wide analysis of the Brachypodium distachyon (L.) P. Beauv. Hsp90 gene family reveals molecular evolution and expression profiling under drought and salt stresses. PloS one, 12(12): e0189187. [
DOI:10.1371/journal.pone.0189187]
45. Zhang, S., X. Xia, J. Shen, Y. Zhou and Z. Sun. 2008. DBMLoc: a Database of proteins with multiple subcellular localizations. BMC bioinformatics, 9(1): 127. [
DOI:10.1186/1471-2105-9-127]
46. Zuehlke, A. and J.L. Johnson. 2010. Hsp90 and co-chaperones twist the functions of diverse client proteins. Biopolymers: Original Research on Biomolecules, 93(3): 211-217. [
DOI:10.1002/bip.21292]