Volume 14, Issue 42 (8-2022)                   jcb 2022, 14(42): 97-105 | Back to browse issues page


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Hajibarat Z, Saidi A. (2022). Structure and Gene Expression of NFX Gene Family in Developmental Stages in Barley, Wheat and Maize. jcb. 14(42), 97-105. doi:10.52547/jcb.14.42.97
URL: http://jcb.sanru.ac.ir/article-1-1270-en.html
Department of Plant Sciences and Biotechnology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University, Tehran, Iran
Abstract:   (1432 Views)
Extended Abstract
Introduction and Objective: NFXL1 and NFXL2 proteins have NF-X1 type zinc fingers domains, DNA binding, and PHD finger motifs, which potentially mediate its protein interactions. NF-X genes play an important role in response to defense signaling using plant hormones.
Material and Methods: In this study, 12 NF-X genes were selected in barley, maize and wheat. The gene structures, duplication patterns, phylogenetic tree, developmental of the 12 NF-X transcription factors in nine species were analyzed to further investigate the functions of these factors. In the present study, a comparative analysis was performed to identify orthologs and paralogues of NF-X in the genomes of maize, barley and wheat.
Results: The phylogenetic tree of NF-X from H.vulgare and Z.mays revealed two groups based on their homology and the exon numbers of NF-X genes, ranging from 1 to 13. According to the synteny analysis, NF-X genes of barley, maize and wheat revealed high similarity, which TaNFXL1.2 with HvNFXL1; HvNFXL2 with TaNFXL1.3, TaNFXL2, TaNFXL2.1; TaNFXL1 with TaNFXL1.1, TaNFXL1.3; ZmNFXL1 with ZmNFXL1.1 genes revealed similarity more than %90. Prediction cis-elements showed that NF-YB; NF-YA; NF-YC, bHLH, myb/SANT, WRKY, Dof, and Trihelix had maximum frequency in the promoter region of NF-X genes.  The HvNF-X2, ZmNF-X2 and TaNF-X2 genes had the highest number of cis-elements. Analysis of NF-X genes showed that tandem duplication and segmental duplication play an important role in the development of barley, maize and wheat genomes. NF-X gene expression analysis showed that these genes were up-regulated in almost all developmental stages. However, the number of tandem and segmental duplication showed that these factors are major factors in the evolution of NF-X genes. Since this is the first study to compare NF-X genes in three species, our findings could be considered as useful source for future NF-X genes studies in comparative studies among different plant species.
Conclusion: The aim of this study was to identify and characterize NF-X genes in nine species via in silico genome-wide analysis approach. HvNFX1, HvNF-X2, and ZmNFXL1.1 genes showed that gene expression in all development stages. The gene structure in most proteins in each group was similar, which validated the NF-X transcription factors phylogenetic classification.

 
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Type of Study: Research | Subject: بيوتكنولوژي گياهي
Received: 2021/06/21 | Revised: 2022/08/6 | Accepted: 2021/12/19 | Published: 2022/08/12

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