Volume 9, Issue 21 (6-2017)                   jcb 2017, 9(21): 100-107 | Back to browse issues page


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(2017). Correlation Analysis of Specific Markers Linked to Flowering Time in Barley (Hordeum vulgare L.) . jcb. 9(21), 100-107. doi:10.29252/jcb.9.21.100
URL: http://jcb.sanru.ac.ir/article-1-800-en.html
Abstract:   (3789 Views)
In order to identify the relationships between photoperiod effects on flowering time in barley and four specific genes (FT2, FT3, FT4 and Ppd-H1), 26 cultivated and wild genotypes were studied in both greenhouse and filed conditions. The Plants were grown at two conditions and phenological traits of days to 50% flowering were recorded in both situations. In addition, the morphology of the 11 traits were measured separately in greenhouse conditions. Marker-trait assosiation showed that Ppd-H1 gene had the most significant negative correlation with days to flowering in both conditions, indicating dominant allele Ppd-H1, reduced the number of days to flowering under long day conditions. Marker was significantly associated with the trait of day to flowering was used in regression analysis and represented the largest variation in Ppd-H1 in both conditions and explained the expression of this gene has a major role in the number of days to flowering. In conclusion, genotypes with dominant Ppd-H1 allele are introduced as the best for using in breeding programs and for growing in the areas with short growing seasons.
 
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Type of Study: Research | Subject: اصلاح نباتات، بیومتری
Received: 2017/07/31 | Accepted: 2017/07/31 | Published: 2017/07/31

References
1. Baurle, I. and C. Dean. 2006. The timing of developmental transitions in plants. Journal of cell, 4: 655-664. [DOI:10.1016/j.cell.2006.05.005]
2. Erixon, P. and B. Oxelman. 2008. Whole-gene positive selection, elevated synonymous substitution rates, duplication, and indel evolution of the chloroplast clpP1 gene. PLoS ONE, Journal of Pone, 86-113 pp. [DOI:10.1371/journal.pone.0001386]
3. Faure, S., J. Higgins, A. Turner and D.A. Laurie. 2007. The FLOWERING LOCUS T-like gene family in barley (Hordeum vulgare). Journal of Genetics, 1: 599-609. [DOI:10.1534/genetics.106.069500]
4. Fisher, R.A. and R. Maurer. 1978. Drought resistance in spring wheat cultivars I. Grain yield responses. Journal of Agricultural Research, 5: 897-912. [DOI:10.1071/AR9780897]
5. Griffiths, J.F., J.H. Miller, D.T. Suzuki, R.C. Lewontin and W.M. Gelbert. 1996. An Introduction to Genetic Analysis. 7th eden. Freeman W.H, 800 pp.
6. Gougerdchi, V., S. Dezhsetan, M. Izadi Dogonchi, M.A. Ebrahimi, A. Asghari and B. Sadeghzadeh. 2017. Assessment of Genetic Diversity and Association Analysis for Phonological Traits Related to Drought Escape in Barley Lines using Microsatellite Markers, 8: 60-69 (In Persian).
7. Jones, H., F.J. Leigh, I. Mackay, M.A. Bower, L.M.J. Smith, M.P. Charles, G. Jones, M.K. Jones, T.A. Brown and W. Powell. 2008. Population-Based Resequencing Reveals That the Flowering Time Adaptation of Cultivated Barley Originated East of the Fertile Crescent. Journal of Molecular Biology and Evolution, 10: 2211-19. [DOI:10.1093/molbev/msn167]
8. Kikuchi, R., H. Kawahigashi, T. Ando, T. Tonooka and H. Handa. 2009. Molecular and Functional Characterization of PEBP Genes in Barley Reveal the Diversification of Their Roles in Flowering. Journal of Plant Physiology, 3: 1341-1353. [DOI:10.1104/pp.108.132134]
9. Laurie, D.A., N. Prachett, J.H. Bezant and J.W. Snape. 1995. RFLP mapping of five major genes and eight quantitative trait loci controlling flowering time in a winter 9 spring barley (Hordeum vulgare L.) cross. Journal of Genome, 3: 575-585. [DOI:10.1139/g95-074]
10. Lee, S. 2012. Converting SNPs to CAPS and CAPS and Dcaps marker. Dept, of Horticulture and Crop Science, 32-59 pp.
11. Nakhaeei Badrabad, M., M. Shokrpour, A. Asghari and A.O. Esfandyari. 2012. Determining Relationships among Dry Matter Remobilization and Some Morphological Traits in Barley Genotypes Using Factor Analysis Metho under Low Water Stress. Journal of Crop Breeding, 4: 109-122 (In Persian).
12. Shaaf, S., M.H. Bihamta, A. Talei, V.A. Moohamadi and B. Kilian. 2012. Association analysis of single nucleotide variation in flowering time genes Ppd-H1, HvCO1, HvGI, in barley (H. vulgar). Journal of Novin Genetic, 2: 179-191 (In Persian).
13. Thiel, T., R. Kota, I. Grosse, N. Stein and A. Graner. 2004. SNP2CAPS: a SNP and INDEL analysis tool for CAPS marker development. Journal of Oxford, 1: 5 pp. [DOI:10.1093/nar/gnh006]
14. Turner, A., J. Beales, S. Faure, R.P. Dunford and D.A. Laurie. 2005. The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Journal of Science, 57: 1031-1034. [DOI:10.1126/science.1117619]
15. Väli, U., M. Brandström, M. Johansson and H. Ellegren. 2008. Insertion-deletion polymorphisms (indels) as genetic markers in natural populations. Journal of BMC Genet, 8: 1471-2156. [DOI:10.1186/1471-2156-9-8]
16. Wang, G., I. Schmalenbach, M.V. Korff, J. Le'on, B. Kilian, J. Rode and K. Pillen. 2010. Association of barley photoperiod and vernalization genes with QTLs for flowering time and agronomic traits in a BC2DH population and a set of wild barley introgression lines. Theoretical and Applied Genetics, 8: 1559-1574. [DOI:10.1007/s00122-010-1276-y]
17. Zlotina, M.M., O.N. Kovaleva, I.G. Loskutov and E.K. Potokina. 2013. The Use of Allele Specific Markers of the Ppd and Vrn Genes for Predicting Growing Season Duration in Barley Cultivars. Russian Journal of Genetics, 4: 254-264. [DOI:10.1134/S2079059713040114]

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