Volume 9, Issue 21 (6-2017)                   jcb 2017, 9(21): 1-9 | Back to browse issues page


XML Persian Abstract Print


Download citation:
BibTeX | RIS | EndNote | Medlars | ProCite | Reference Manager | RefWorks
Send citation to:

(2017). Identification of Genes Controlling Seedling Stage Traits in Iranian Rice Recombinant Lines under Drought Stress Conditions. jcb. 9(21), 1-9. doi:10.29252/jcb.9.21.1
URL: http://jcb.sanru.ac.ir/article-1-789-en.html
Abstract:   (4456 Views)
     Rice is one the most important crops in Iran and worldwide. Abiotic stresses including drought, restrict rice production. In order to saturation of linkage map in recombinant lines population caused by Sepidroud × Anbarbou  crosses, an experiment was conducted using 96 recombinant lines and 40 ISSR markers at Gonbad Kavous University. 96 Recombinant lines were plant under hydroponic conditions for mapping of traits related to drought stress. Shoot weight, root weight, biomass, genetic score, leaf area, shoot length, root length and root thickness were recorded. Linkage map covered 1709.29 cM of rice genome. Four QTLs mapped on chromosomes 3(2 QTLs) and 7 (2QTLs) in drought. qDRW-3 and qDBM-3 with LOD=2.518 and 2.727 had positive additive effects on root weight and biomass, respectively and explained 11.4 and 12.3% of phenotypic variation. The results of present work can be used for improvement of drought tolerance in rice seedlings after determining marker validation.
Full-Text [PDF 422 kb]   (1401 Downloads)    
Type of Study: Research | Subject: اصلاح نباتات، بیومتری
Received: 2017/07/30 | Revised: 2017/08/2 | Accepted: 2017/07/30 | Published: 2017/07/30

References
1. Babu, R.C., B.D. Nguyen, V. Chamarerk, P. Shanmugasundaram, P. Chezhian, P. Jeyaprakash, S.K. Ganesh, A. Palchamy, S. Sadasivam, S. Sarkarung, L.J. Wade and H.T. Nguyen. 2003. Genetic analysis of drought resistance in rice by molecular markers: association between secondary traits and field performance. Crop Science, 43: 1457-146. [DOI:10.2135/cropsci2003.1457]
2. Cui, K., J. Huang, Y. Xing, S. Yu, C. Xu and S. Peng. 2008. Mapping QTLs for Seedling Characteristics under Different Water Supply Conditions in Rice (Oryza sativa L.). Physiologia Plantarum, 132: 53-68.
3. Dedatta, S.K. 1981. Crop establishment technologies and cultural practices for upland rice. Paper presented at the upland rice workshop, 19 pp.
4. Gomez, S.M., S.S. Kumar, P. Jeyaprakash, R. Suresh, K.R. Biji, N.M. Boopathi, A.H. Price and R. Babu. 2006. Mapping QTLs linked to physio-morphological and plant production traits under drought stress in rice (Oryza sativa L.) in the target environment. American Journal Biochemistry and Biotechnology, 2: 161-169. [DOI:10.3844/ajbbsp.2006.161.169]
5. Gregorio, G.B., D. Senadhira and R. Mendoza. 1997. Screening rice for salinity tolerance. IRRI. Dis. Paper No. 22, Los Baños. Philippine, 31 pp.
6. Li, Z., P. Mu, C. Li, H. Zhang, Z. Li, Y. Gao and X. Wang. 2005. QTL Mapping of Root Traits in a Doubled Haploid Population from a Cross between Upland and Lowland Japonica Rice in Three Environments. Theoretical and Applied Genetics, 110: 1244-1252. [DOI:10.1007/s00122-005-1958-z]
7. Karimi, H. 1991. Field Crop. Tehran University Press. Third edition, 387 pp.
8. Kato, Y., S. Hirotsu, K. Nemoto and J. Yamagishi. 2008. Identification of QTLs controlling rice drought tolerance at seedling stage in hydroponic culture. Euphytica, 160: 423-430 [DOI:10.1007/s10681-007-9605-1]
9. Kordrostami1, M., B. Rabiei, A. Sabouri and H. Sabouri. 2015. Identification of QTLs Controlling Cooking and Milling Quality Traits in an F2:4 Population of Rice (Oryza sativa L.). Journal of Crop Breeding, 7: 16-26 (In Persian).
10. Kosambi, D.D. 1994. The estimation of map distances from recombination values. Annual Eugen, 12: 172-175. [DOI:10.1111/j.1469-1809.1943.tb02321.x]
11. Kumar, R., R. Venuprasad and G.N. Atlin. 2007. Genetic analysis of rainfed lowland rice drought tolerance under naturally-occurring stress in eastern India: Heritability and QTL effects. Field Crops Research, 103: 42-52. [DOI:10.1016/j.fcr.2007.04.013]
12. MacMillan, K., K. Emrich, H.P. Piepho, C.E. Mullins and A.H. Price. 2006. Assessing the importance of genotype environment interaction for root traits in rice using a mapping population conventional QTL analysis. Theoretical and Applied Genetics, 113: 953-964. [DOI:10.1007/s00122-006-0357-4]
13. Maleki, H.H., N. Abdi, R. Darvishzadeh and M. Jafari. 2016. Mapping QTLs Controlling Drought Tolerance Indices in Sunflower (Helianthus annus L.). Journal of Crop Breeding, 8: 228-235 (In Persian).
14. Norton Gareth, J., M.J. Aitkenhead, F.S. Khowaja, W.R. Whalley and A.H. Price. 2008. A bioinformatic and transcriptomic approach to identifying positional candidate genes without fine mapping: an example using rice root-growth QTLs. Genomics, 92: 344-352. [DOI:10.1016/j.ygeno.2008.07.002]
15. Price, A.H., K.A. Steele, B.J. Moore, P.B. Barraclough and L.J. Clark. 2000. A Combined RFLP and AFLP Linkage Map of Upland Rice (Oryza sativa L.) Used to Identify QTLs for Root-Penetration Ability. Theoretical and Applied Genetics, 100: 49-56. [DOI:10.1007/s001220050007]
16. Price, A.H., J. Townend, M.P. Jones, A. Audebert and B. Courtois. 2002. Mapping QTLs associated with drought avoidance in upland rice grown in the Philippines and West Africa. Plant Molecular Biology, 48: 683-695. [DOI:10.1023/A:1014805625790]
17. Price, A.H., K.A. Steele, B.J. Moore and R.G.W. Jones. 2002. Upland rice grown in soil-filled chambers and exposed to contrasting water deficit regimes mapping quantitative trait loci for root morphology and distribution. Field Crops Research, 76: 25-43. [DOI:10.1016/S0378-4290(02)00010-2]
18. Redona, E.D. and D.J. Mackill. 1996. Mapping Quantitative Trait Loci for Seedling-Vigor in Rice Using RFLPs. Theoretical and Applied Genetics, 92: 395-402. [DOI:10.1007/s001220050141]
19. Sabouri, H., A. Biabani, M. Katouzi, A. Sabouri, R. Khatami Nejhad, Sh. Mohammad Alegh, M. Najjar, A. and M. Pirasteh. 2011. Relationship between genotype and phenotype in rice under drought stress. Research work in College of Agriculture Science and Natural Resource. Gonbad Kavous University, 145 pp.
20. Saghaei Maroof, M.A., R.M. Biyashev, G.P. Yang, Q. Zhang and R.W. Allard. 1994. Extraordinarily polymorphic microsatellites DNA in barely species diversity, chromosomal location and population dynamics. Proceeding of National Academy Science, 91: 5466-5570. [DOI:10.1073/pnas.91.12.5466]
21. Srividhya, A., L.R. Vemireddy, P.V. Ramanarao, S. Sridhar, M. Jayaprada, G. Anuradha, B. Srilakshmi, H.K. Reddy, A.S. Hariprasad and E.A. Siddiq. 2011. Molecular Mapping of QTLs for Drought Related Traits at Seedling Stage under PEG Induced Stress Conditions in Rice. American Journal of Plant Sciences, 2:190-201. [DOI:10.4236/ajps.2011.22021]
22. Venuprasad, R., H.E. Shashidhar, S. Hittalmani and G.S. Hemamalini. 2002. Tagging quantitative trait loci associated with grain yield and root morphological traits in rice (Oryza sativa L.) under contrasting moisture regimes. Euphytica, 128: 293-300. [DOI:10.1023/A:1021281428957]
23. Vinod, M.S., N. Sarma, K. Manjunatha, A. Kanbar, N.B. Prakash and H.E.S. Hashidhar. 2006. Candidate genes for drought tolerance and improved productivity in rice (Oryza sativa L.). Journal of Bioscience, 31: 69-74. [DOI:10.1007/BF02705237]
24. Xu, J.C., J.Z. Li, X.W. Zheng, L. XZou and L.H. Zhu. 2001. QTL Mapping of the Root Traits in Rice Seedling. Acta Genetica Sinica, 28: 433-438.
25. Xu, C.G., X.Q. Li, Y. Xue, Y.W. Huang, J. Gao and Y.Z. Xing. 2004. Comparison of Quantitative Trait Loci Controlling Seedling Characteristics at Two Seedling Stages Using Rice Recombinant Inbred Lines. Theoretical and Applied Genetics, 109: 640-647. [DOI:10.1007/s00122-004-1671-3]
26. Yang, J.C., K. Liu, S.F. Zhang, X.M. Wang, Zh.Q. Wang and L.J. Liu. 2008. Hormones in rice spikelets in responses to water stress during meiosis. Acta Agronomica Sinica, 34: 111-118. [DOI:10.1016/S1875-2780(08)60005-X]
27. Yoshida, S., D.A. Forno, J.H. Cock and K.A. Gomez. 1976. Laboratory manual for physiological studies of rice. IRRI, 83 pp.

Add your comments about this article : Your username or Email:
CAPTCHA

Rights and permissions
Creative Commons License This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.

© 2024 CC BY-NC 4.0 | Journal of Crop Breeding

Designed & Developed by : Yektaweb